Solexa Technology:tools and sources

protocols & technical notes

DNA Copy Number Analysis Algorithms

Infinium Genotyping Data Analysis

Using Whole-Genome Amplified DNA Samples in the GoldenGate Genotyping Assay

"TOP/BOT" Strand and "A/B" Allele  - A guide to Illumina method for determining Strand and Allele for the GoldenGate and Infinium Assays

Optimized Staining Temperature for XStain Protocol

custom goldengate genotyping assay design

GoldenGate Genotyping ADT template files

Designing Custom GoldenGate Genotyping Assays

iSelect custom infinium genotyping assay design

Infinium Genotyping ADT template files

Designing iSelect Custom Infinium Genotyping Assays

custom goldengate methylation assay design

GoldenGate Methylation ADT template files

Designing Custom GoldenGate Methylation Profiling Panels

gene expression

Probe Sequences and Annotation

beadstudio

DNA Copy Number Analysis in BeadStudio v3.1

HelixTree DSF Export Report Plug-in to BeadStudio

Sapio/Exemplar Plug-in to BeadStudio

third-party tools

illumina onnect tools for beadstudio

data analysis tools for genome analyzer